Expertises

  • Computer Science

    • Convolutional Neural Network
    • Detection
    • Positive Selection
    • Field Programmable Gate Arrays
    • Neural Network Architecture
    • Linkage
    • Algorithms
  • Biochemistry, Genetics and Molecular Biology

    • Selective Sweep

Organisaties

Publicaties

2024
FPGA-accelerated Quantum Transport MeasurementsIn 2023 International Conference on Field Programmable Technology (ICFPT) (pp. 44-52). IEEE. Haarman, T., Sousa de Almeida, A. J., Heskes, A., Zwanenburg, F. A. & Alachiotis, N.https://doi.org/10.1109/ICFPT59805.2023.00010Accelerated Real-Time Classification of Evolving Data Streams using Adaptive Random ForestsIn 2023 International Conference on Field Programmable Technology (ICFPT), Article 10416141 (pp. 232-237). IEEE. Ridder, F., Chen, K.-H. & Alachiotis, N.https://doi.org/10.1109/ICFPT59805.2023.00031
2023
Effective Data Preprocessing Techniques for CNN-based Selective Sweep DetectionIn 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Article 10385303 (pp. 793-800). IEEE. Zhao, H. & Alachiotis, N.https://doi.org/10.1109/BIBM58861.2023.10385303Neutron Radiation Tests of the NEORV32 RISC-V SoC on Flash-Based FPGAsIn 36th IEEE International Symposium on Defect and Fault Tolerance in VLSI and Nanotechnology Systems, DFT 2023. IEEE. Böhmer, K., Forlin, B., Cazzaniga, C., Rech, P., Furano, G., Alachiotis, N. & Ottavi, M.https://doi.org/10.1109/DFT59622.2023.10313556SweepNet: A Lightweight CNN Architecture for the Classification of Adaptive Genomic RegionsIn PASC '23: Proceedings of the Platform for Advanced Scientific Computing Conference, Article 12 (pp. 1-10). ACM Press. Zhao, H., Pavlidis, P. & Alachiotis, N.https://doi.org/10.1145/3592979.3593411A Survey of Processing Systems for Phylogenetics and Population GeneticsACM Transactions on Reconfigurable Technology and Systems, 16(3), 1-27. Corts, R. & Alachiotis, N.https://doi.org/10.1145/3588033Selective sweeps identification in distinct groups of cultivated rye (Secale cereale L.) germplasm provides potential candidate genes for crop improvementBMC Plant Biology, 23, Article 323, 1-17 (E-pub ahead of print/First online). Hawliczek, A., Borzecka, E., Tofil, K., Alachiotis, N., Bolibok, L., Gawroński, P., Siekmann, D., Hackauf, B., Dušinsk, R., Švec, M. & Bolibok-Bragoszewska, H.https://doi.org/10.1186/s12870-023-04337-1Genome-wide scans for selective sweeps using convolutional neural networksBioinformatics, 39(Supplement1), i194-i203. Zhao, H., Souilljee, M., Pavlidis, P. & Alachiotis, N.https://doi.org/10.1093/bioinformatics/btad265Improving Performance of Hardware Accelerators by Optimizing Data Movement: A Bioinformatics Case StudyElectronics, 12(3), Article 586. Knoben, P. & Alachiotis, N.https://doi.org/10.3390/electronics12030586An unprotected RISC-V Soft-core processor on an SRAM FPGA: Is it as bad as it sounds?In Proceedings - 2023 IEEE European Test Symposium, ETS 2023. IEEE. Forlin, B. E., van Huffelen, W., Cazzaniga, C., Rech, P., Alachiotis, N. & Ottavi, M.https://doi.org/10.1109/ETS56758.2023.10174076

Onderzoeksprofielen

Vakken collegejaar 2023/2024

Vakken in het huidig collegejaar worden toegevoegd op het moment dat zij definitief zijn in het Osiris systeem. Daarom kan het zijn dat de lijst nog niet compleet is voor het gehele collegejaar.

Vakken collegejaar 2022/2023

Adres

Universiteit Twente

Zilverling (gebouwnr. 11), kamer 5035
Hallenweg 19
7522 NH Enschede

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